Pose
The predicted ternary in 3D. Receptor as cartoon, peptide as a tube coloured by per-residue pLDDT, ligand as ball-and-stick. Controls reuse BINMAN's viewer idiom.
Loading structure
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The per-seed geometry below is the text alternative for this viewer: every number it can show is in the table.
Per-seed geometry
| Job | Complex | Conditioning | Seed | ipTM (receptor-peptide) | ipTM (global) | pLDDT | Affinity |
|---|---|---|---|---|---|---|---|
| binary | unconstrained | 1 | 0.8402 | 0.8759 | 0.936 | — | |
| binary | unconstrained | 2 | 0.8636 | 0.8772 | 0.929 | — | |
| binary | unconstrained | 3 | 0.8376 | 0.9127 | 0.841 | — | |
| binary | unconstrained | 4 | 0.8924 | 0.8934 | 0.939 | — | |
| binary | unconstrained | 5 | 0.8911 | 0.9423 | 0.892 | — | |
| ternary | conditioned | 1 | 0.8850 | 0.9735 | 0.957 | -0.968 | |
| ternary | conditioned | 2 | 0.8765 | 0.9545 | 0.910 | -0.965 | |
| ternary | conditioned | 3 | 0.8064 | 0.9527 | 0.890 | -0.965 | |
| ternary | conditioned | 4 | 0.0815 | 0.8047 | 0.952 | -0.932 | |
| ternary | conditioned | 5 | 0.9109 | 0.9707 | 0.906 | -0.978 | |
| ternary | unconstrained | 1 | 0.8894 | 0.9734 | 0.956 | -0.574 | |
| ternary | unconstrained | 2 | 0.8904 | 0.9699 | 0.947 | -0.604 | |
| ternary | unconstrained | 3 | 0.8218 | 0.9539 | 0.890 | -0.619 | |
| ternary | unconstrained | 4 | 0.9156 | 0.9684 | 0.912 | -0.586 | |
| ternary | unconstrained | 5 | 0.9140 | 0.9703 | 0.904 | -0.606 |
Affinity is recorded for the small-molecule chain only and is never a ranking key (spec 4.7). There is no protein-protein affinity path in Boltz-2, so no peptide affinity is reported anywhere in this application.